Commit 579ba2d4 by Alexandre Routier

Remove SLURM argument in DWI-Preprocessing (T1). Fix functionnal test of this pipeline

parent f84e7413
Pipeline #1480 passed with stages
in 1 minute 40 seconds
......@@ -74,7 +74,5 @@ class DWIPreprocessingUsingT1CLI(ce.CmdParser):
if args.n_procs:
pipeline.run(plugin='MultiProc',
plugin_args={'n_procs': args.n_procs})
elif args.slurm:
pipeline.run(plugin='SLURM')
else:
pipeline.run()
......@@ -98,10 +98,11 @@ def test_DWIPreprocessingUsingT1():
root= dirname(abspath(__file__))
pipeline = DWIPreprocessingUsingT1(bids_directory=join(root, 'data', 'DWIPreprocessingUsingT1', 'in', 'bids'),
caps_directory=join(root, 'data', 'DWIPreprocessingUsingT1', 'in', 'caps'),
phase_encoding_direction='y',
total_readout_time=0.14,
tsv_file=join(root, 'data', 'DWIPreprocessingUsingT1', 'in', 'subjects.tsv'),
low_bval=5)
pipeline.parameters = {
'epi_param': dict([('readout_time', 0.14), ('enc_dir', 'y')]),
}
pipeline.build()
pass
......
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