Commit ab6c27e0 by Alexandre Routier

Update CLI template

parent 5776b361
Pipeline #1086 passed with stages
in 2 minutes 21 seconds
......@@ -7,10 +7,6 @@
"type": "binary",
"name": "clinica",
"version": ">=0.1.0"
},
{
"type": "software",
"name": "matlab"
}
]
}
\ No newline at end of file
}
......@@ -129,7 +129,7 @@ class StatisticsSurfaceCLI(ce.CmdParser):
if args.custom_file is None:
cprint('No feature type selected : using cortical thickness as default value')
args.custom_file = '@subject/@session/t1/freesurfer_cross_sectional/@subject_@session/surf/@hemi.thickness.fwhm@fwhm.fsaverage.mgh'
args.feature_label = 'cortical_thickness'
args.feature_label = 'ct'
else:
cprint('Using custom features.')
if args.feature_label is None:
......
......@@ -18,6 +18,11 @@ class {{ pipeline.class_name }}CLI(ce.CmdParser):
self._name = '{{ pipeline.command_name }}'
def define_description(self):
"""Define a description of this pipeline.
"""
# self._description = 'Brief description: https://gitlab.icm-institute.org/aramislab/clinica/wikis/docs/Pipelines/{{ pipeline.class_name }}'
def define_options(self):
"""Define the sub-command arguments
"""
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment