Update CLI template

clinica/pipelines/statistics_surface/info.json

@@ -7,10 +7,6 @@
             "type": "binary",
             "name": "clinica",
             "version": ">=0.1.0"
-        },
-                {
-            "type": "software",
-            "name": "matlab"
         }
     ]
-}
\ No newline at end of file
+}

clinica/pipelines/statistics_surface/statistics_surface_cli.py

@@ -129,7 +129,7 @@ class StatisticsSurfaceCLI(ce.CmdParser):
             if args.custom_file is None:
                 cprint('No feature type selected : using cortical thickness as default value')
                 args.custom_file = '@subject/@session/t1/freesurfer_cross_sectional/@subject_@session/surf/@hemi.thickness.fwhm@fwhm.fsaverage.mgh'
-                args.feature_label = 'cortical_thickness'
+                args.feature_label = 'ct'
             else:
                 cprint('Using custom features.')
                 if args.feature_label is None:

clinica/resources/templates/pipeline_template/cli.py.j2

@@ -18,6 +18,11 @@ class {{ pipeline.class_name }}CLI(ce.CmdParser):
 
         self._name = '{{ pipeline.command_name }}'
 
+    def define_description(self):
+        """Define a description of this pipeline.
+        """
+        # self._description = 'Brief description: https://gitlab.icm-institute.org/aramislab/clinica/wikis/docs/Pipelines/{{ pipeline.class_name }}'
+
     def define_options(self):
         """Define the sub-command arguments
         """