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Cycle Analytics
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aramislab
clinica
Commits
ab6c27e0
Commit
ab6c27e0
authored
Jun 12, 2018
by
Alexandre Routier
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Update CLI template
parent
5776b361
Pipeline
#1086
passed with stages
in 2 minutes 21 seconds
Changes
3
Pipelines
1
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3 changed files
with
7 additions
and
7 deletions
+7
-7
info.json
clinica/pipelines/statistics_surface/info.json
+1
-6
statistics_surface_cli.py
...ca/pipelines/statistics_surface/statistics_surface_cli.py
+1
-1
cli.py.j2
clinica/resources/templates/pipeline_template/cli.py.j2
+5
-0
No files found.
clinica/pipelines/statistics_surface/info.json
View file @
ab6c27e0
...
...
@@ -7,10 +7,6 @@
"type"
:
"binary"
,
"name"
:
"clinica"
,
"version"
:
">=0.1.0"
},
{
"type"
:
"software"
,
"name"
:
"matlab"
}
]
}
\ No newline at end of file
}
clinica/pipelines/statistics_surface/statistics_surface_cli.py
View file @
ab6c27e0
...
...
@@ -129,7 +129,7 @@ class StatisticsSurfaceCLI(ce.CmdParser):
if
args
.
custom_file
is
None
:
cprint
(
'No feature type selected : using cortical thickness as default value'
)
args
.
custom_file
=
'@subject/@session/t1/freesurfer_cross_sectional/@subject_@session/surf/@hemi.thickness.fwhm@fwhm.fsaverage.mgh'
args
.
feature_label
=
'c
ortical_thickness
'
args
.
feature_label
=
'c
t
'
else
:
cprint
(
'Using custom features.'
)
if
args
.
feature_label
is
None
:
...
...
clinica/resources/templates/pipeline_template/cli.py.j2
View file @
ab6c27e0
...
...
@@ -18,6 +18,11 @@ class {{ pipeline.class_name }}CLI(ce.CmdParser):
self._name = '{{ pipeline.command_name }}'
def define_description(self):
"""Define a description of this pipeline.
"""
# self._description = 'Brief description: https://gitlab.icm-institute.org/aramislab/clinica/wikis/docs/Pipelines/{{ pipeline.class_name }}'
def define_options(self):
"""Define the sub-command arguments
"""
...
...
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