Commit ba16fba0 by simonabottani

Rename T1 Volume Pipelines

parent d462904f
Pipeline #822 passed with stages
in 21 seconds
......@@ -141,7 +141,7 @@ class T1VolumeNewTemplate(cpe.Pipeline):
import nipype.pipeline.engine as npe
import nipype.interfaces.utility as nutil
import clinica.pipelines.t1_volume_segmentation.t1_volume_segmentation_utils as seg_utils
import clinica.pipelines.t1_volume_tissue_segmentation.t1_volume_tissue_segmentation_utils as seg_utils
# Reading BIDS
# ============
......@@ -160,7 +160,7 @@ class T1VolumeNewTemplate(cpe.Pipeline):
import nipype.pipeline.engine as npe
import nipype.interfaces.io as nio
import clinica.pipelines.t1_volume_segmentation.t1_volume_segmentation_utils as seg_utils
import clinica.pipelines.t1_volume_tissue_segmentation.t1_volume_tissue_segmentation_utils as seg_utils
from clinica.utils.io import zip_nii
import os.path as op
import re
......@@ -324,7 +324,7 @@ class T1VolumeNewTemplate(cpe.Pipeline):
import nipype.interfaces.matlab as mlab
import nipype.pipeline.engine as npe
import nipype.interfaces.utility as nutil
import clinica.pipelines.t1_volume_segmentation.t1_volume_segmentation_utils as seg_utils
import clinica.pipelines.t1_volume_tissue_segmentation.t1_volume_tissue_segmentation_utils as seg_utils
import clinica.pipelines.t1_volume_create_dartel.t1_volume_create_darte_utils as dartel_utils
import clinica.pipelines.t1_volume_dartel2mni.t1_volume_dartel2mni_utils as dartel2mni_utils
from clinica.utils.io import unzip_nii
......
......@@ -40,7 +40,7 @@ class T1VolumeTissueSegmentation(cpe.Pipeline):
Example:
>>> from t1_volume_tissue_segmentation import T1VolumeTissueSegmentation
>>> pipelines = T1VolumeSegmentation('~/MYDATASET_BIDS', '~/MYDATASET_CAPS')
>>> pipelines = T1VolumeTissueSegmentation('~/MYDATASET_BIDS', '~/MYDATASET_CAPS')
>>> pipelines.parameters = {
>>> # ...
>>> }
......@@ -102,7 +102,7 @@ class T1VolumeTissueSegmentation(cpe.Pipeline):
import nipype.pipeline.engine as npe
import nipype.interfaces.utility as nutil
import t1_volume_segmentation_utils as utils
import t1_volume_tissue_segmentation_utils as utils
# Reading BIDS
# ============
......@@ -120,7 +120,7 @@ class T1VolumeTissueSegmentation(cpe.Pipeline):
"""
import nipype.pipeline.engine as npe
import t1_volume_segmentation_utils as utils
import t1_volume_tissue_segmentation_utils as utils
import nipype.interfaces.io as nio
from clinica.utils.io import zip_nii
......
......@@ -147,7 +147,7 @@ class ApplySegmentationDeformation(SPMCommand):
Examples
--------
>>> import clinica.pipelines.t1_volume_segmentation.t1_volume_segmentation_utils as seg_utils
>>> import clinica.pipelines.t1_volume_tissue_segmentation.t1_volume_tissue_segmentation_utils as seg_utils
>>> inv = seg_utils.ApplySegmentationDeformation()
>>> inv.inputs.in_files = 'T1w.nii'
>>> inv.inputs.deformation = 'y_T1w.nii'
......
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